Basic Information
Locus ID:
gene-QYE76_021029
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 53049477 | 53054529 | + | gene-QYE76_021029 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 39,545.73 Da | 42.04 | 78.88 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 7.61786E-24 | - |
| Pfam | PF09280 | XPC-binding domain | 244 | 299 | 1.3E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 321 | 357 | 3.0E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 147 | 183 | 1.7E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.6E-15 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 142 | 193 | 7.11E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 82 | 1.13E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 304 | 363 | 9.36E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 240 | 304 | 3.53E-21 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 233 | 298 | 1.2E-26 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.8E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 138 | 188 | 1.9E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 313 | 361 | 4.4E-23 | - |
| SMART | SM00165 | uba_6 | 145 | 185 | 1.2E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 322 | 359 | 1.4E-8 | IPR015940 |
| SMART | SM00727 | CBM | 242 | 285 | 1.3E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.4E-18 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 365 | 1.2E-111 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.519186 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 144 | 186 | 12.33002 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 320 | 360 | 14.691536 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 333 | 347 | 1.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 316 | 332 | 1.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 270 | 292 | 1.6E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 348 | 363 | 1.6E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 100 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_047081077.1 | ubiquitin receptor RAD23b-like isoform X1 [Lolium rigidum] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | F2EBG8 | Ubiquitin receptor RAD23 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology