halophFGD

Basic Information

Locus ID: gene-QYE76_020687

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: cellular macromolecule catabolic process

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	43165903	43166352	+	gene-QYE76_020687

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.38	12,435.53 Da	62.53	77.41	-0.75

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	3	71	2.9E-10	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	1	71	8.29E-11	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	62	2.7E-18	-
ProSiteProfiles	PS50053	Ubiquitin domain profile.	1	70	10.963123	IPR000626

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08770 (ubiquitin C)

Pathway:

ko03320 (PPAR signaling pathway) map03320 (PPAR signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G36170.1	Ubiquitin supergroup;Ribosomal protein L40e.
RefSeq	XP_047078682.1	ubiquitin-60S ribosomal protein L40-like [Lolium rigidum]
Swiss-Prot	P69310	Ubiquitin OS=Avena sativa OX=4498 PE=1 SV=1
TrEMBL	A0A3B6BZS4	Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	1	gene-QYE76_020687
Poaceae	Oryza sativa	1	LOC_Os01g45430.1
Poaceae	Thinopyrum elongatum	1	Tel5E01G420800
Poaceae	Triticum dicoccoides	2	gene_TRIDC2BG009080, gene_TRIDC6BG026380
Salicaceae	Populus euphratica	1	populus_peu27400