Basic Information
Locus ID:
gene-QYE76_020587
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 40576715 | 40588106 | - | gene-QYE76_020587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 150,921.09 Da | 50.27 | 88.56 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 739 | 857 | 2.64313E-55 | - |
| CDD | cd00303 | retropepsin_like | 230 | 327 | 1.12933E-12 | - |
| Pfam | PF01693 | Caulimovirus viroplasmin | 1087 | 1108 | 7.7E-6 | IPR011320 |
| Pfam | PF17917 | RNase H-like domain found in reverse transcriptase | 733 | 836 | 7.0E-33 | IPR041373 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 496 | 840 | 8.12E-92 | IPR043502 |
| SUPERFAMILY | SSF55658 | L9 N-domain-like | 1086 | 1110 | 3.19E-5 | IPR009027 |
| SUPERFAMILY | SSF50630 | Acid proteases | 226 | 335 | 6.88E-5 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 577 | 645 | 9.5E-14 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 488 | 576 | 2.4E-15 | - |
| Gene3D | G3DSA:3.40.970.10 | - | 1085 | 1114 | 2.8E-5 | IPR037056 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 211 | 352 | 1.4E-17 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 655 | 748 | 3.4E-25 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 957 | 1040 | - | - |
| Coils | Coil | Coil | 1110 | 1161 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019098329.1 | PREDICTED: uncharacterized protein LOC109131614, partial [Camelina sativa] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2G9HYA0 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |