Basic Information
Locus ID:
gene-QYE76_019437
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 10565423 | 10570670 | - | gene-QYE76_019437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 71,831.11 Da | 43.78 | 87.29 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 333 | 422 | 5.97085E-16 | - |
| Pfam | PF00098 | Zinc knuckle | 61 | 76 | 9.2E-5 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 51 | 79 | 5.23E-6 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 56 | 113 | 3.8E-7 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 311 | 444 | 1.8E-8 | IPR021109 |
| SMART | SM00343 | c2hcfinal6 | 61 | 77 | 0.004 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 62 | 76 | 9.899961 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 646 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048556572.1 | uncharacterized protein LOC125537321 [Triticum urartu] | 0 |
| TrEMBL | A0A0D9XYF2 | Retrotrans_gag domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 33 | gene-QYE76_000029, gene-QYE76_000961, gene-QYE76_010060 ... |