Basic Information
Locus ID:
gene-QYE76_019212
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 4483276 | 4492552 | + | gene-QYE76_019212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 102,835.16 Da | 54.23 | 89.54 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 112 | 202 | 2.3E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 643 | 705 | 4.0E-12 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 393 | 510 | 2.1E-5 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 634 | 759 | 1.2E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 837 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 837 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| Coils | Coil | Coil | 812 | 832 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_030443636.1 | uncharacterized protein LOC115665966 [Syzygium oleosum] | 0 |
| TrEMBL | A0A2Z6PWT2 | Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_418330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |