Basic Information
Locus ID:
gene-QYE76_018966
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_977 | 62284 | 65654 | - | gene-QYE76_018966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 122,607.40 Da | 51.38 | 73.54 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 923 | 1016 | 1.6363E-17 | - |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 924 | 1015 | 3.0E-10 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 328 | 417 | 9.8E-16 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 921 | 1021 | 2.53E-15 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 907 | 1044 | 8.6E-20 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 935 | 946 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 808 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 786 | 808 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051191609.1 | uncharacterized protein LOC127305246 [Lolium perenne] | 0 |
| TrEMBL | A0A2T7AA45 | Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |