Basic Information
Locus ID:
gene-QYE76_018778
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_112 | 119949 | 123376 | + | gene-QYE76_018778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.63 | 56,453.00 Da | 54.64 | 80.57 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 417 | 479 | 2.0E-13 | IPR000719 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 85 | 133 | 5.7E-8 | IPR013103 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 140 | 217 | 4.6E-16 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 104 | 258 | 4.0E-5 | IPR043502 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 417 | 478 | 3.24E-16 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 415 | 498 | 5.1E-15 | - |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 35 | 6.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 313 | 510 | 10.336914 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 421 | 433 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 415 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_012701436.1 | uncharacterized protein LOC105914402 [Setaria italica] | 0 |
| P92519 | Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1 | 0 | |
| TrEMBL | Q9AY59 | Putative copia-like retrotransposon Hopscotch polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0091J19.18 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for gene-QYE76_018778.