Basic Information
Locus ID:
gene-QYE76_018752
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
intracellular transport of virus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_88 | 88764 | 89228 | - | gene-QYE76_018752 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 17,343.94 Da | 54.74 | 91.04 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 74 | 145 | 3.1E-24 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 65 | 1.1E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 67 | 6.48E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 67 | 146 | 3.89E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 68 | 1.5E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 69 | 151 | 5.4E-34 | - |
| SMART | SM00213 | ubq_7 | 72 | 143 | 2.0E-23 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 65 | 6.9E-16 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 72 | 147 | 22.983143 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 69 | 15.993241 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 103 | 123 | 4.2E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 82 | 102 | 4.2E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 124 | 145 | 4.2E-23 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_047093329.1 | polyubiquitin-like [Lolium rigidum] | 0 |
| P62972 | Polyubiquitin (Fragment) OS=Xenopus laevis OX=8355 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6T9I2 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015143, gene-QYE76_018752 |