Basic Information
Locus ID:
gene-QYE76_018378
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_668 | 230066 | 235885 | + | gene-QYE76_018378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 98,295.81 Da | 33.31 | 80.21 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 517 | 606 | 6.66199E-17 | - |
| CDD | cd00303 | retropepsin_like | 271 | 360 | 6.66199E-17 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 494 | 627 | 5.5E-10 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 248 | 381 | 5.5E-10 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 786 | 805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 805 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048556572.1 | uncharacterized protein LOC125537321 [Triticum urartu] | 0 |
| TrEMBL | A0A151SSI8 | CCHC-type domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_003982 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 33 | gene-QYE76_000029, gene-QYE76_000961, gene-QYE76_010060 ... |