Basic Information
Locus ID:
gene-QYE76_017702
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_1560 | 1272 | 7868 | + | gene-QYE76_017702 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 104,596.00 Da | 39.29 | 84.33 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 787 | 880 | 4.35697E-16 | - |
| Pfam | PF13650 | Aspartyl protease | 788 | 878 | 3.5E-5 | - |
| Pfam | PF00098 | Zinc knuckle | 316 | 331 | 0.0021 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 299 | 339 | 9.59E-6 | IPR036875 |
| SUPERFAMILY | SSF50630 | Acid proteases | 784 | 888 | 2.14E-7 | IPR021109 |
| Gene3D | G3DSA:4.10.60.10 | - | 288 | 401 | 1.5E-7 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 765 | 901 | 6.2E-24 | IPR021109 |
| SMART | SM00343 | c2hcfinal6 | 316 | 332 | 0.052 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 379 | 395 | 0.057 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 317 | 331 | 9.108787 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 295 | - | - |
| Coils | Coil | Coil | 112 | 135 | - | - |
| Coils | Coil | Coil | 211 | 231 | - | - |
| Coils | Coil | Coil | 83 | 110 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_045089081.1 | uncharacterized protein LOC123497118 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A533HS20 | Retrotransposon gag domain-containing protein (Fragment) OS=Gemella sp. OX=1966354 GN=DI638_10665 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 35 | gene-QYE76_002238, gene-QYE76_002580, gene-QYE76_006006 ... |