Basic Information
Locus ID:
gene-QYE76_017560
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_613 | 145744 | 149039 | - | gene-QYE76_017560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 121,157.35 Da | 51.83 | 69.84 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 904 | 997 | 1.16531E-17 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 336 | 427 | 5.7E-16 | IPR005162 |
| Pfam | PF13975 | gag-polyprotein putative aspartyl protease | 906 | 996 | 3.9E-9 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 902 | 1002 | 2.61E-14 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 888 | 1025 | 8.5E-19 | IPR021109 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 916 | 927 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 833 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 833 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 704 | - | - |
| Coils | Coil | Coil | 9 | 29 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051191609.1 | uncharacterized protein LOC127305246 [Lolium perenne] | 0 |
| TrEMBL | A0A2T7AA45 | Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |