Basic Information
Locus ID:
gene-QYE76_016886
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_597 | 76802 | 79359 | - | gene-QYE76_016886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 50,934.36 Da | 74.49 | 76.05 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 188 | 229 | 1.73987E-14 | - |
| Pfam | PF13639 | Ring finger domain | 187 | 229 | 7.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 187 | 235 | 1.6E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 174 | 241 | 3.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 228 | 3.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 229 | 12.961374 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 422 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051222014.1 | uncharacterized protein LOC127340284 [Lolium perenne] | 0 |
| TrEMBL | A0A8I7B6B7 | RING-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH02.4409, BH02.4448, CH02.1430, CH02.4496, CH02.4497 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0312920.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016886, gene-QYE76_016887, gene-QYE76_057622 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G392400 |