Basic Information
Locus ID:
gene-QYE76_016504
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_68 | 63581 | 71337 | - | gene-QYE76_016504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 95,200.44 Da | 45.36 | 79.22 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 163 | 298 | 1.31683E-52 | - |
| CDD | cd17920 | DEXHc_RecQ | 1 | 162 | 6.78356E-77 | - |
| Pfam | PF14493 | Helix-turn-helix domain | 615 | 709 | 4.5E-17 | IPR029491 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 187 | 288 | 1.3E-19 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 301 | 362 | 1.4E-10 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 507 | 572 | 1.2E-12 | IPR002121 |
| Pfam | PF09382 | RQC domain | 366 | 472 | 5.9E-21 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 1 | 140 | 1.4E-14 | IPR011545 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 360 | 473 | 2.45E-22 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 19 | 303 | 8.32E-54 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 501 | 585 | 2.4E-17 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 163 | 363 | 7.9E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 364 | 486 | 2.1E-34 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 500 | 587 | 8.6E-16 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 161 | 1.6E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 1 | 171 | 9.0E-8 | IPR014001 |
| SMART | SM00490 | helicmild6 | 208 | 289 | 2.3E-25 | IPR001650 |
| SMART | SM00341 | hrdc7 | 504 | 584 | 1.8E-5 | IPR002121 |
| SMART | SM00956 | RQC_2 | 369 | 474 | 4.3E-20 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 1 | 421 | 3.8E-135 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 179 | 334 | 17.768894 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 504 | 584 | 18.308914 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 155 | 21.493172 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 793 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 800 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_047071070.1 | ATP-dependent DNA helicase RecQ-like [Lolium rigidum] | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6ASM2 | ATP-dependent DNA helicase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology