Basic Information
Locus ID:
gene-QYE76_015925
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 251303757 | 251316298 | + | gene-QYE76_015925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 111,557.87 Da | 48.69 | 84.22 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 754 | 893 | 2.15755E-36 | - |
| CDD | cd00303 | retropepsin_like | 449 | 544 | 8.35119E-10 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 445 | 551 | 1.28E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 714 | 922 | 5.34E-49 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 716 | 813 | 1.1E-20 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 430 | 567 | 2.4E-16 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 814 | 827 | 1.1E-20 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 828 | 899 | 6.8E-23 | IPR043128 |
| Coils | Coil | Coil | 946 | 973 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021721980.1 | uncharacterized protein LOC110689504 [Chenopodium quinoa] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | A0A6P6GDJ4 | RNA-directed DNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC112492555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |