Basic Information
Locus ID:
gene-QYE76_015677
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 243805192 | 243810358 | - | gene-QYE76_015677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 88,060.32 Da | 39.93 | 84.36 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09279 | RNase_HI_like | 409 | 483 | 1.23943E-24 | - |
| Pfam | PF17917 | RNase H-like domain found in reverse transcriptase | 284 | 366 | 1.7E-11 | IPR041373 |
| Pfam | PF13456 | Reverse transcriptase-like | 409 | 482 | 6.4E-13 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 409 | 480 | 1.1E-12 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 563 | 635 | 5.5E-10 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 279 | 370 | 2.52E-9 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 408 | 494 | 1.8E-17 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 556 | 666 | 1.3E-16 | IPR036397 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024196443.1 | uncharacterized protein LOC112199695 [Rosa chinensis] | 0 |
| TrEMBL | A0A2T7AA45 | Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |