halophFGD

Basic Information

Locus ID: gene-QYE76_015651

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	242853343	242861729	+	gene-QYE76_015651

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.73	156,520.34 Da	45.31	89.39	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09274	RNase_HI_RT_Ty3	1128	1214	7.7381E-34	-
CDD	cd00303	retropepsin_like	600	697	3.57966E-12	-
CDD	cd01647	RT_LTR	895	1034	1.11865E-59	-
Pfam	PF03732	Retrotransposon gag protein	300	390	5.8E-8	IPR005162
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	1097	1162	2.1E-15	IPR041577
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	875	1033	5.9E-22	IPR000477
SUPERFAMILY	SSF56672	DNA/RNA polymerases	866	1197	6.12E-102	IPR043502
SUPERFAMILY	SSF50630	Acid proteases	597	705	3.84E-5	IPR021109
Gene3D	G3DSA:3.30.70.270	-	1043	1136	1.2E-26	IPR043128
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	895	959	2.1E-45	-
Gene3D	G3DSA:3.30.70.270	-	899	1034	2.1E-45	IPR043128
Gene3D	G3DSA:2.40.70.10	Acid Proteases	581	721	4.7E-17	IPR021109
Coils	Coil	Coil	1257	1277	-	-
Coils	Coil	Coil	1297	1331	-	-

KEGG Pathway

KO Term:

K03124 (transcription initiation factor TFIIB)

Pathway:

ko03022 (Basal transcription factors) map03022 (Basal transcription factors)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_021744072.1	uncharacterized protein LOC110710127 [Chenopodium quinoa]
Swiss-Prot	P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
TrEMBL	A0A2N9IZG6	Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	112	gene-QYE76_000435, gene-QYE76_001231, gene-QYE76_002540 ... gene-QYE76_002906, gene-QYE76_004013, gene-QYE76_004245, gene-QYE76_004470, gene-QYE76_004504, gene-QYE76_004659, gene-QYE76_004829, gene-QYE76_007022, gene-QYE76_007346, gene-QYE76_007868, gene-QYE76_008444, gene-QYE76_009909, gene-QYE76_010480, gene-QYE76_010781, gene-QYE76_011868, gene-QYE76_012357, gene-QYE76_012464, gene-QYE76_012974, gene-QYE76_013433, gene-QYE76_013553, gene-QYE76_013715, gene-QYE76_013980, gene-QYE76_014180, gene-QYE76_014307, gene-QYE76_014441, gene-QYE76_014730, gene-QYE76_015024, gene-QYE76_015651, gene-QYE76_016925, gene-QYE76_017717, gene-QYE76_021302, gene-QYE76_022708, gene-QYE76_023965, gene-QYE76_024041, gene-QYE76_024291, gene-QYE76_024449, gene-QYE76_024496, gene-QYE76_024759, gene-QYE76_024838, gene-QYE76_026599, gene-QYE76_028145, gene-QYE76_028896, gene-QYE76_029364, gene-QYE76_029443, gene-QYE76_030456, gene-QYE76_032336, gene-QYE76_032366, gene-QYE76_033749, gene-QYE76_033790, gene-QYE76_034303, gene-QYE76_035451, gene-QYE76_035826, gene-QYE76_038712, gene-QYE76_038850, gene-QYE76_039001, gene-QYE76_039782, gene-QYE76_040556, gene-QYE76_040877, gene-QYE76_040916, gene-QYE76_041471, gene-QYE76_041588, gene-QYE76_041589, gene-QYE76_041893, gene-QYE76_042050, gene-QYE76_042385, gene-QYE76_043720, gene-QYE76_043790, gene-QYE76_044482, gene-QYE76_046041, gene-QYE76_046102, gene-QYE76_048022, gene-QYE76_049479, gene-QYE76_049925, gene-QYE76_050086, gene-QYE76_051824, gene-QYE76_051915, gene-QYE76_051958, gene-QYE76_052119, gene-QYE76_052218, gene-QYE76_054375, gene-QYE76_054624, gene-QYE76_054745, gene-QYE76_055510, gene-QYE76_056511, gene-QYE76_056535, gene-QYE76_057080, gene-QYE76_059367, gene-QYE76_059583, gene-QYE76_060009, gene-QYE76_060642, gene-QYE76_061318, gene-QYE76_062390, gene-QYE76_063337, gene-QYE76_063439, gene-QYE76_063947, gene-QYE76_064310, gene-QYE76_064329, gene-QYE76_065000, gene-QYE76_065542, gene-QYE76_066216, gene-QYE76_066786, gene-QYE76_067566, gene-QYE76_069050, gene-QYE76_069638, gene-QYE76_069704, gene-QYE76_069889, gene-QYE76_070414, gene-QYE76_071122, gene-QYE76_071930