Basic Information
Locus ID:
gene-QYE76_015618
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 242054942 | 242069012 | + | gene-QYE76_015618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 138,963.48 Da | 54.71 | 73.62 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 640 | 796 | 3.38426E-27 | - |
| CDD | cd12108 | Hr-like | 35 | 162 | 9.44197E-31 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1105 | 1148 | 1.4905E-17 | - |
| CDD | cd12108 | Hr-like | 291 | 419 | 6.00885E-17 | - |
| Pfam | PF05495 | CHY zinc finger | 977 | 1052 | 9.5E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1153 | 1210 | 3.7E-23 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 38 | 164 | 2.9E-13 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 289 | 420 | 2.0E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 638 | 797 | 1.3E-8 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1043 | 1098 | 1.83E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1103 | 1151 | 2.68E-6 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 969 | 1033 | 2.09E-8 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1099 | 1149 | 1.0E-7 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 635 | 854 | 2.7E-23 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 294 | 436 | 2.8E-18 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1176 | 1216 | 1.1E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 30 | 182 | 4.5E-32 | - |
| SMART | SM00184 | ring_2 | 1106 | 1147 | 1.1E-4 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 970 | 1039 | 25.028297 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1106 | 1147 | 10.954966 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1042 | 1105 | 30.069431 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 889 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_051210186.1 | zinc finger protein BRUTUS-like [Lolium perenne] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Y6M9 | Zinc finger protein BRUTUS OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology