Basic Information
Locus ID:
gene-QYE76_015362
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 233675643 | 233677016 | - | gene-QYE76_015362 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 49,823.87 Da | 48.09 | 69.47 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 329 | 410 | 1.33E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 327 | 414 | 2.9E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 333 | 378 | 8.992817 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 329 | 457 | 13.461734 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 351 | 360 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051187676.1 | uncharacterized protein LOC127301464 [Lolium perenne] | 0 |
| TrEMBL | A0A3B6KIR0 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |