Basic Information
Locus ID:
gene-QYE76_015143
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
intracellular transport of virus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 226987604 | 226988032 | + | gene-QYE76_015143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 15,997.35 Da | 51.92 | 91.20 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 2 | 53 | 1.5E-12 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 62 | 133 | 2.5E-24 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 56 | 7.34E-13 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 55 | 134 | 3.02E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 56 | 1.0E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 57 | 139 | 3.8E-34 | - |
| SMART | SM00213 | ubq_7 | 1 | 53 | 1.7E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 60 | 131 | 2.0E-23 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 60 | 135 | 22.983143 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 20 | 57 | 12.574503 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 91 | 111 | 3.6E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 70 | 90 | 3.6E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 112 | 133 | 3.6E-23 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_047093329.1 | polyubiquitin-like [Lolium rigidum] | 0 |
| P0CG67 | Polyubiquitin-B OS=Gorilla gorilla gorilla OX=9595 GN=UBB PE=3 SV=1 | 0 | |
| TrEMBL | A0A7L4HNS9 | UBB protein (Fragment) OS=Scopus umbretta OX=33581 GN=Ubb PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_015143, gene-QYE76_018752 |