Basic Information
Locus ID:
gene-QYE76_015076
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
E3 ubiquitin ligase SUD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 225485710 | 225490809 | + | gene-QYE76_015076 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 89,952.83 Da | 42.92 | 112.56 | 0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16702 | RING_CH-C4HC3_MARCH6 | 30 | 77 | 1.992E-21 | - |
| Pfam | PF12906 | RING-variant domain | 30 | 76 | 1.1E-13 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 79 | 5.55E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 86 | 1.2E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 29 | 77 | 3.3E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 22 | 83 | 20.205593 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34100.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047044873.1 | probable E3 ubiquitin ligase SUD1 isoform X2 [Lolium rigidum] | 0 |
| F4JKK0 | Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6XL54 | RING-CH-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH01.1398, CH08.5 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0614080 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0093830.1, HORVU.MOREX.r3.5HG0513360.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_015076, gene-QYE76_015082, gene-QYE76_033712 ... |
| Poaceae | Oryza coarctata | 1 | Oco15G000020 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01040.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G001100, gene-BS78_10G266300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400020, Pt_Chr0505827 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G014250, Chr29G013220 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G728300, Tel7E01G597300 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG063260, gene_TRIDC5AG058880 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G405100.1, TraesCS5D02G415200.1 ... |