Basic Information
Locus ID:
gene-QYE76_015012
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 223587497 | 223602389 | - | gene-QYE76_015012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 113,004.43 Da | 49.53 | 76.43 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 466 | 543 | 1.18024E-6 | - |
| CDD | cd01647 | RT_LTR | 628 | 784 | 1.14396E-46 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 624 | 810 | 2.22E-47 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 658 | 790 | 6.9E-40 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 447 | 550 | 1.5E-7 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 983 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 983 | - | - |
| Coils | Coil | Coil | 865 | 885 | - | - |
| Coils | Coil | Coil | 85 | 108 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| P31843 | RNA-directed DNA polymerase homolog OS=Oenothera berteroana OX=3950 PE=4 SV=1 | 0 | |
| TrEMBL | Q946U3 | Reverse transcriptase (Fragment) OS=Avena sativa OX=4498 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |