Basic Information
Locus ID:
gene-QYE76_014643
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 212094588 | 212100763 | + | gene-QYE76_014643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 137,996.80 Da | 39.02 | 108.03 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1001 | 1221 | 8.89632E-122 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 684 | 978 | 2.9115E-83 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 418 | 580 | 1.20566E-79 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 105 | 392 | 3.04105E-87 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1020 | 1168 | 1.8E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 686 | 930 | 1.4E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 436 | 473 | 9.8E-6 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 493 | 532 | 1.9E-7 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 104 | 371 | 6.0E-28 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 98 | 400 | 1.15E-35 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 683 | 984 | 2.09E-45 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 996 | 1233 | 6.09E-67 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 413 | 601 | 1.12E-45 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 649 | 984 | 1.4E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 407 | 470 | 9.3E-12 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 471 | 614 | 1.6E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 987 | 1238 | 6.4E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 94 | 400 | 6.1E-50 | IPR036640 |
| SMART | SM00382 | AAA_5 | 445 | 580 | 1.6E-8 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1029 | 1214 | 6.7E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 418 | 603 | 16.926907 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 686 | 966 | 32.724995 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1005 | 1237 | 17.887287 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 104 | 384 | 31.783804 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 505 | 519 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_051205214.1 | ABC transporter C family member 3-like [Lolium perenne] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452ZEJ7 | ABC transporter C family member 3 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology