Basic Information
Locus ID:
gene-QYE76_014077
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 192736128 | 192737583 | - | gene-QYE76_014077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 46,257.67 Da | 65.99 | 86.08 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 201 | 249 | 1.39141E-14 | - |
| Pfam | PF12906 | RING-variant domain | 201 | 248 | 4.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 251 | 2.07E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 252 | 2.2E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 200 | 249 | 5.7E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 193 | 255 | 18.304432 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 46 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047094356.1 | uncharacterized protein LOC124706733 isoform X1 [Lolium rigidum] | 0 |
| TrEMBL | A0A0Q3J320 | RING-CH-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_3g00220v3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology