Basic Information
Locus ID:
gene-QYE76_013864
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 186658636 | 186662166 | + | gene-QYE76_013864 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 70,979.38 Da | 35.26 | 89.67 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 559 | 661 | 6.9E-30 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 79 | 174 | 1.6E-11 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 559 | 659 | 2.62E-7 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 430 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051218595.1 | uncharacterized protein LOC127335897 [Lolium perenne] | 0 |
| P92520 | Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1 | 0 | |
| TrEMBL | Q8W5D1 | Putaive copia-like retrotransposon polyprotein, 5'-partial (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0008A05.28 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 30 | gene-QYE76_000020, gene-QYE76_000848, gene-QYE76_001346 ... |