Basic Information
Locus ID:
gene-QYE76_013636
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 179165899 | 179172735 | + | gene-QYE76_013636 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 79,005.67 Da | 50.95 | 93.37 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 389 | 431 | 5.7E-10 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 268 | 467 | 1.89E-60 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 335 | 429 | 1.2E-27 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 238 | 332 | 2.8E-20 | IPR043128 |
| Coils | Coil | Coil | 571 | 591 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A699KWU9 | Reverse transcriptase domain-containing protein (Fragment) OS=Tanacetum cinerariifolium OX=118510 GN=Tci_687327 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |