Basic Information
Locus ID:
gene-QYE76_012796
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
polyadenylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 152582788 | 152588188 | + | gene-QYE76_012796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 31,597.70 Da | 78.04 | 61.37 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12306 | RRM_II_PABPs | 90 | 159 | 1.142E-42 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 91 | 159 | 2.3E-15 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 70 | 159 | 2.99E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 34 | 159 | 1.9E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 90 | 161 | 9.4E-18 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 89 | 159 | 14.931036 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 243 | - | - |
| Coils | Coil | Coil | 34 | 61 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51120.1 | polyadenylate-binding protein 1. Encodes a homolog of the protein PABN1, a polyadenylation factor subunit. | 0 |
| RefSeq | XP_051217293.1 | polyadenylate-binding protein 1-like [Lolium perenne] | 0 |
| Q93VI4 | Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6WQH0 | RRM domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_007842, gene-QYE76_012796, gene-QYE76_016880 ... |