Basic Information
Locus ID:
gene-QYE76_012786
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 152348668 | 152379671 | + | gene-QYE76_012786 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 469,441.16 Da | 44.62 | 87.11 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1982 | 2125 | 4.0E-12 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 107 | 9.5E-30 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4076 | 4164 | 1.1E-7 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3188 | 3350 | 3.1E-10 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2201 | 2347 | 6.3E-8 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 553 | 766 | 2.0E-33 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 372 | 1.5E-64 | IPR031646 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2645 | 2712 | 2.65E-5 | IPR035892 |
| SUPERFAMILY | SSF50729 | PH domain-like | 803 | 900 | 3.89E-6 | - |
| ProSiteProfiles | PS50003 | PH domain profile. | 786 | 898 | 6.832 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1515 | 1534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1174 | 1195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1517 | 1534 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_051196888.1 | intermembrane lipid transfer protein VPS13 [Lolium perenne] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YXV7 | PH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology