Basic Information
Locus ID:
gene-QYE76_012553
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 144694726 | 144703706 | - | gene-QYE76_012553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 105,596.90 Da | 46.71 | 84.08 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 495 | 592 | 1.35435E-12 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 195 | 285 | 2.6E-9 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 492 | 600 | 2.81E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 762 | 857 | 4.34E-17 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 476 | 614 | 5.7E-18 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 753 | 901 | 1.2E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 105 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039682991.1 | uncharacterized protein LOC120576082 [Medicago truncatula] | 0 |
| TrEMBL | A0A2Z6PWT2 | Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_418330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |