halophFGD

Basic Information

Locus ID: gene-QYE76_012386

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	138932287	138943772	-	gene-QYE76_012386

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.53	184,176.31 Da	51.52	77.19	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01650	RT_nLTR_like	1076	1339	1.44848E-55	-
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	510	742	1.0E-73	IPR013103
Pfam	PF14223	gag-polypeptide of LTR copia-type	124	258	1.4E-18	-
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	1081	1339	2.2E-33	IPR000477
SUPERFAMILY	SSF56672	DNA/RNA polymerases	1044	1309	1.26E-16	IPR043502
SUPERFAMILY	SSF56672	DNA/RNA polymerases	510	708	1.41E-18	IPR043502
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	1062	1339	16.972723	IPR000477
MobiDBLite	mobidb-lite	consensus disorder prediction	779	799	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	17	36	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	288	303	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	258	308	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	265	279	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	969	983	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	862	926	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	944	1016	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	862	877	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	784	799	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_051201760.1	uncharacterized protein LOC127315299 [Lolium perenne]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	Q2QYV4	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g01470 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Casuarinaceae	Casuarina glauca	1	Cgl02G1953
Poaceae	Lolium multiflorum	59	gene-QYE76_000611, gene-QYE76_000731, gene-QYE76_000814 ... gene-QYE76_000818, gene-QYE76_001036, gene-QYE76_001587, gene-QYE76_001965, gene-QYE76_002171, gene-QYE76_002498, gene-QYE76_003753, gene-QYE76_004144, gene-QYE76_004452, gene-QYE76_007515, gene-QYE76_009620, gene-QYE76_009808, gene-QYE76_010372, gene-QYE76_011474, gene-QYE76_012386, gene-QYE76_012718, gene-QYE76_016361, gene-QYE76_016591, gene-QYE76_017228, gene-QYE76_022282, gene-QYE76_022694, gene-QYE76_023442, gene-QYE76_023583, gene-QYE76_024608, gene-QYE76_027537, gene-QYE76_028138, gene-QYE76_031171, gene-QYE76_031263, gene-QYE76_031911, gene-QYE76_032503, gene-QYE76_033169, gene-QYE76_033541, gene-QYE76_033861, gene-QYE76_034216, gene-QYE76_035076, gene-QYE76_036366, gene-QYE76_042151, gene-QYE76_043182, gene-QYE76_044293, gene-QYE76_052034, gene-QYE76_053577, gene-QYE76_053942, gene-QYE76_054068, gene-QYE76_055466, gene-QYE76_056540, gene-QYE76_057182, gene-QYE76_057238, gene-QYE76_057398, gene-QYE76_060767, gene-QYE76_060788, gene-QYE76_063325, gene-QYE76_063928, gene-QYE76_065623, gene-QYE76_066085, gene-QYE76_066268, gene-QYE76_066930