Basic Information
Locus ID:
gene-QYE76_011687
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 113929382 | 113940973 | - | gene-QYE76_011687 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 110,410.50 Da | 52.32 | 82.01 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 335 | 432 | 6.29287E-13 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 36 | 126 | 2.4E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 602 | 749 | 2.45E-27 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 332 | 440 | 3.07E-5 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 316 | 454 | 3.1E-18 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 593 | 757 | 1.5E-22 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| Coils | Coil | Coil | 937 | 957 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021750881.1 | uncharacterized protein LOC110716562 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A5N6NL53 | Retrotrans_gag domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_18560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |