Basic Information
Locus ID:
gene-QYE76_011541
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
DnaJ molecular chaperone homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 108379272 | 108387425 | + | gene-QYE76_011541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 64,521.67 Da | 27.34 | 66.90 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 259 | 275 | 3.0E-4 | IPR001878 |
| Pfam | PF00098 | Zinc knuckle | 538 | 554 | 3.0E-4 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 366 | 486 | 4.1E-16 | - |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 83 | 207 | 4.3E-16 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 249 | 279 | 1.14E-6 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 528 | 558 | 1.14E-6 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 226 | 290 | 2.5E-5 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 505 | 567 | 2.0E-5 | - |
| SMART | SM00343 | c2hcfinal6 | 259 | 275 | 0.0062 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 538 | 554 | 0.0062 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 539 | 554 | 8.564854 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 260 | 275 | 8.564854 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 533 | - | - |
| Coils | Coil | Coil | 189 | 209 | - | - |
| Coils | Coil | Coil | 468 | 488 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051199985.1 | uncharacterized protein LOC127313537 [Lolium perenne] | 0 |
| TrEMBL | A0A453I8F0 | CCHC-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah030472 |
| Poaceae | Lolium multiflorum | 226 | gene-QYE76_000514, gene-QYE76_000718, gene-QYE76_000828 ... |