Basic Information
Locus ID:
gene-QYE76_011417
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 102396459 | 102402269 | - | gene-QYE76_011417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 107,616.27 Da | 52.68 | 88.90 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 81 | 171 | 8.6E-10 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 612 | 674 | 3.67E-12 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 362 | 478 | 3.5E-5 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 603 | 714 | 2.7E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 802 | - | - |
| Coils | Coil | Coil | 918 | 938 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_030443636.1 | uncharacterized protein LOC115665966 [Syzygium oleosum] | 0 |
| TrEMBL | A0A6P6TES6 | uncharacterized protein LOC113700697 OS=Coffea arabica OX=13443 GN=LOC113700697 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |