Basic Information
Locus ID:
gene-QYE76_011398
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 101764916 | 101772458 | + | gene-QYE76_011398 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 58,505.89 Da | 45.25 | 86.36 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 218 | 516 | 2.02197E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 480 | 516 | 5.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 438 | 473 | 0.005 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 299 | 8.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 217 | 254 | 6.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 214 | 516 | 2.56E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 207 | 480 | 1.5E-48 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 481 | 525 | 4.8E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 302 | 357 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 428 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 474 | 0.47 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 254 | 3.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 517 | 1.1E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 222 | 263 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 222 | 255 | 9.731054 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 21 | 53 | 8.500705 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 308 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 484 | 516 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 484 | 525 | 12.525585 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 304 | 11.286501 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_047093050.1 | WD repeat-containing protein WDS homolog isoform X1 [Lolium rigidum] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5ZRX1 | LisH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology