halophFGD

Basic Information

Locus ID: gene-QYE76_010872

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	78241019	78245496	+	gene-QYE76_010872

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.67	148,680.94 Da	40.27	95.39	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01650	RT_nLTR_like	632	894	1.93227E-61	-
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	637	893	5.7E-43	IPR000477
Pfam	PF13966	zinc-binding in reverse transcriptase	1138	1222	2.4E-21	IPR026960
Pfam	PF13966	zinc-binding in reverse transcriptase	397	481	3.8E-27	IPR026960
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	20	153	2.9E-11	IPR000477
SUPERFAMILY	SSF56672	DNA/RNA polymerases	588	865	9.45E-20	IPR043502
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	1	153	9.531586	IPR000477
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	618	894	18.346155	IPR000477

Best hit

Source	Best Hit ID	Description
RefSeq	XP_051213610.1	uncharacterized protein LOC127331471 [Lolium perenne]
Swiss-Prot	P16423	Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
TrEMBL	A0A453B5Y2	Reverse transcriptase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	1	gene_15553
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000031727
Asteraceae	Flaveria trinervia	30	Ftri10G20412, Ftri10G33243, Ftri12G02514, Ftri12G08305 ... Ftri12G30924, Ftri13G08657, Ftri13G26094, Ftri13G30350, Ftri15G16888, Ftri15G24875, Ftri16G05122, Ftri16G24418, Ftri16G29669, Ftri16G30269, Ftri17G17651, Ftri17G30072, Ftri18G01709, Ftri18G05932, Ftri18G08795, Ftri18G11264, Ftri1G02664, Ftri3G11379, Ftri4G17008, Ftri4G32487, Ftri5G00239, Ftri5G00971, Ftri5G08115, Ftri8G05997, Ftri8G12221, Ftri9G24284
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno13g05290
Plantaginaceae	Plantago ovata	4	Pov_00007688, Pov_00012778, Pov_00020452, Pov_00028875
Plumbaginaceae	Limonium bicolor	1	Lb2G11920
Poaceae	Echinochloa crus-galli	22	AH01.4072, AH01.4286, AH01.5179, AH03.2975, AH04.816 ... AH05.2234, AH06.2570, AH08.2233, BH02.1198, BH02.222, BH04.1914, BH05.3851, BH05.807, BH07.501, BH07.91, BH09.3009, CH02.3876, CH03.2109, CH05.3703, CH05.823, CH07.905, CH09.1898
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_4AG0310820, gene-QOZ80_5AG0395840 ... gene-QOZ80_6AG0527250
Poaceae	Hordeum vulgare	53	HORVU.MOREX.r3.1HG0031030.1.CDS1 ... HORVU.MOREX.r3.1HG0031680.1.CDS1, HORVU.MOREX.r3.1HG0035170.1.CDS1, HORVU.MOREX.r3.1HG0045570.1.CDS1, HORVU.MOREX.r3.1HG0047260.1.CDS1, HORVU.MOREX.r3.1HG0064370.1.CDS1, HORVU.MOREX.r3.1HG0088420.1.CDS1, HORVU.MOREX.r3.2HG0103040.1.CDS1, HORVU.MOREX.r3.2HG0106070.1.CDS1, HORVU.MOREX.r3.2HG0106080.1.CDS1, HORVU.MOREX.r3.2HG0110340.1.CDS1, HORVU.MOREX.r3.2HG0155900.1.CDS1, HORVU.MOREX.r3.2HG0155970.1.CDS1, HORVU.MOREX.r3.2HG0156400.1, HORVU.MOREX.r3.2HG0156470.1.CDS1, HORVU.MOREX.r3.2HG0194100.1.CDS1, HORVU.MOREX.r3.3HG0232100.1.CDS1, HORVU.MOREX.r3.3HG0241680.1.CDS1, HORVU.MOREX.r3.3HG0241940.1.CDS1, HORVU.MOREX.r3.3HG0259430.1.CDS1, HORVU.MOREX.r3.3HG0263750.1.CDS1, HORVU.MOREX.r3.3HG0263780.1.CDS1, HORVU.MOREX.r3.3HG0263830.1.CDS1, HORVU.MOREX.r3.3HG0275930.1, HORVU.MOREX.r3.3HG0278880.1.CDS1, HORVU.MOREX.r3.3HG0283150.1.CDS1, HORVU.MOREX.r3.4HG0366810.1.CDS1, HORVU.MOREX.r3.4HG0367520.1.CDS1, HORVU.MOREX.r3.4HG0376060.1.CDS1, HORVU.MOREX.r3.4HG0414720.1, HORVU.MOREX.r3.5HG0428150.1, HORVU.MOREX.r3.5HG0454990.1.CDS1, HORVU.MOREX.r3.5HG0456730.1.CDS1, HORVU.MOREX.r3.5HG0467830.1.CDS1, HORVU.MOREX.r3.5HG0473550.1.CDS1, HORVU.MOREX.r3.5HG0484380.1.CDS1, HORVU.MOREX.r3.6HG0566050.1.CDS1, HORVU.MOREX.r3.6HG0576160.1.CDS1, HORVU.MOREX.r3.6HG0578200.1.CDS1, HORVU.MOREX.r3.6HG0594200.1.CDS1, HORVU.MOREX.r3.6HG0597520.1.CDS1, HORVU.MOREX.r3.6HG0602820.1.CDS1, HORVU.MOREX.r3.6HG0607670.1.CDS1, HORVU.MOREX.r3.6HG0609410.1.CDS1, HORVU.MOREX.r3.6HG0623590.1.CDS1, HORVU.MOREX.r3.6HG0632190.1.CDS1, HORVU.MOREX.r3.7HG0643870.1.CDS1, HORVU.MOREX.r3.7HG0650590.1.CDS1, HORVU.MOREX.r3.7HG0676730.1.CDS1, HORVU.MOREX.r3.7HG0722160.1.CDS1, HORVU.MOREX.r3.7HG0729580.1.CDS1, HORVU.MOREX.r3.7HG0734700.1.CDS1, HORVU.MOREX.r3.7HG0751400.1.CDS1
Poaceae	Lolium multiflorum	62	gene-QYE76_001722, gene-QYE76_003634, gene-QYE76_005818 ... gene-QYE76_007277, gene-QYE76_008012, gene-QYE76_008121, gene-QYE76_008268, gene-QYE76_008635, gene-QYE76_008664, gene-QYE76_008940, gene-QYE76_009843, gene-QYE76_010872, gene-QYE76_011430, gene-QYE76_011576, gene-QYE76_012103, gene-QYE76_015395, gene-QYE76_015685, gene-QYE76_017211, gene-QYE76_017324, gene-QYE76_019405, gene-QYE76_019940, gene-QYE76_020199, gene-QYE76_020596, gene-QYE76_023545, gene-QYE76_026296, gene-QYE76_026894, gene-QYE76_030234, gene-QYE76_030654, gene-QYE76_031089, gene-QYE76_032842, gene-QYE76_033286, gene-QYE76_034077, gene-QYE76_034103, gene-QYE76_034265, gene-QYE76_037342, gene-QYE76_038659, gene-QYE76_039933, gene-QYE76_039981, gene-QYE76_041575, gene-QYE76_043113, gene-QYE76_043552, gene-QYE76_045719, gene-QYE76_048296, gene-QYE76_049069, gene-QYE76_050150, gene-QYE76_052515, gene-QYE76_056797, gene-QYE76_057097, gene-QYE76_058423, gene-QYE76_059867, gene-QYE76_060106, gene-QYE76_060703, gene-QYE76_060830, gene-QYE76_061071, gene-QYE76_062946, gene-QYE76_064118, gene-QYE76_064951, gene-QYE76_067068, gene-QYE76_067255, gene-QYE76_067870, gene-QYE76_070148, gene-QYE76_070731
Poaceae	Oryza coarctata	10	Oco01G001980, Oco02G030260, Oco10G006380, Oco10G007770 ... Oco13G008770, Oco14G014750, Oco17G008150, Oco18G003250, Oco21G008340, Oco24G003360
Poaceae	Oryza sativa	5	LOC_Os04g20550.1, LOC_Os08g06590.1, LOC_Os08g41054.1 ... LOC_Os09g23390.1, LOC_Os11g35820.1
Poaceae	Paspalum vaginatum	25	gene-BS78_01G114100, gene-BS78_01G123700, gene-BS78_K077700 ... gene-BS78_01G177100, gene-BS78_03G040700, gene-BS78_03G135900, gene-BS78_03G355400, gene-BS78_04G300500, gene-BS78_05G167800, gene-BS78_05G202800, gene-BS78_05G233700, gene-BS78_05G288800, gene-BS78_06G021200, gene-BS78_07G130200, gene-BS78_07G191800, gene-BS78_07G205700, gene-BS78_08G042700, gene-BS78_08G092700, gene-BS78_08G173700, gene-BS78_09G086300, gene-BS78_09G118100, gene-BS78_09G153900, gene-BS78_10G005700, gene-BS78_10G083400, gene-BS78_K320300
Poaceae	Puccinellia tenuiflora	28	Pt_Chr0100114, Pt_Chr0100224, Pt_Chr0100927, Pt_Chr0105232 ... Pt_Chr0201718, Pt_Chr0205344, Pt_Chr0205380, Pt_Chr0205839, Pt_Chr0207007, Pt_Chr0303070, Pt_Chr0303096, Pt_Chr0303097, Pt_Chr0307264, Pt_Chr0404160, Pt_Chr0500401, Pt_Chr0501499, Pt_Chr0502476, Pt_Chr0502762, Pt_Chr0504972, Pt_Chr0600790, Pt_Chr0603223, Pt_Chr0603445, Pt_Chr0605906, Pt_Chr0700859, Pt_Chr0703273, Pt_Chr0705252, Pt_Ctg00097, Pt_Ctg00368
Poaceae	Sporobolus alterniflorus	44	Chr01G006180, Chr01G010730, Chr02G012690, Chr02G022710 ... Chr02G023000, Chr03G010260, Chr05G011930, Chr05G023440, Chr05G030270, Chr06G006530, Chr07G012350, Chr08G009620, Chr08G015070, Chr09G017030, Chr0G002360, Chr0G005970, Chr10G013850, Chr12G007580, Chr12G010110, Chr13G014360, Chr13G016220, Chr15G008100, Chr15G008260, Chr15G010570, Chr15G011190, Chr16G011910, Chr16G012590, Chr16G015260, Chr17G005530, Chr17G010880, Chr18G002120, Chr19G003700, Chr19G014860, Chr22G004730, Chr22G005900, Chr22G014390, Chr23G006020, Chr25G006230, Chr25G012290, Chr25G014890, Chr27G000110, Chr27G000910, Chr28G008380, Chr30G006730
Poaceae	Triticum dicoccoides	5	gene_TRIDC1AG036730, gene_TRIDC3AG022030 ... gene_TRIDC3BG033630, gene_TRIDC7AG027550, gene_TRIDC7BG018330
Poaceae	Triticum aestivum	1	TraesCS2A02G239400.1
Poaceae	Zea mays	2	Zm00001eb279530_P001, Zm00001eb431450_P001
Poaceae	Zoysia japonica	14	nbis-gene-11598, nbis-gene-19612, nbis-gene-19782 ... nbis-gene-24625, nbis-gene-29145, nbis-gene-34469, nbis-gene-37022, nbis-gene-39964, nbis-gene-43689, nbis-gene-45472, nbis-gene-54430, nbis-gene-54555, nbis-gene-55161, nbis-gene-9007
Poaceae	Zoysia macrostachya	2	Zma_g17653, Zma_g24925