Basic Information
Locus ID:
gene-QYE76_010008
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 51071139 | 51075769 | - | gene-QYE76_010008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.33 | 82,730.22 Da | 43.97 | 96.52 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 620 | 756 | 2.37263E-71 | - |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 78 | 171 | 9.0E-13 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 501 | 726 | 1.82E-11 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 495 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_020165492.1 | uncharacterized mitochondrial protein AtMg00810-like [Aegilops tauschii subsp. strangulata] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | B8AMT3 | Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_14210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 30 | gene-QYE76_000020, gene-QYE76_000848, gene-QYE76_001346 ... |