Basic Information
Locus ID:
gene-QYE76_009808
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 45100100 | 45109088 | - | gene-QYE76_009808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 130,951.66 Da | 40.52 | 73.86 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1028 | 1116 | 6.84162E-36 | - |
| Pfam | PF00069 | Protein kinase domain | 26 | 370 | 1.9E-41 | IPR000719 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 890 | 1004 | 2.0E-19 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 482 | 616 | 6.5E-19 | - |
| Pfam | PF00098 | Zinc knuckle | 675 | 691 | 1.3E-4 | IPR001878 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 14 | 393 | 6.37E-53 | IPR011009 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 664 | 697 | 3.29E-6 | IPR036875 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 19 | 124 | 3.9E-13 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 125 | 385 | 1.2E-36 | - |
| SMART | SM00343 | c2hcfinal6 | 675 | 691 | 0.0011 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 676 | 691 | 9.603271 | IPR001878 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 26 | 370 | 35.226887 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 158 | 170 | - | IPR008266 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 32 | 55 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 637 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 646 | 661 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20930.1 | cyclin-dependent kinase B2;2. Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle. | 0 |
| RefSeq | XP_047042940.1 | putative cyclin-dependent kinase F-2 [Lolium rigidum] | 0 |
| Q8LG64 | Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana OX=3702 GN=CDKB2-2 PE=1 SV=2 | 0 | |
| TrEMBL | Q2QUS2 | Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g15290 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1953 |
| Poaceae | Lolium multiflorum | 59 | gene-QYE76_000611, gene-QYE76_000731, gene-QYE76_000814 ... |