Basic Information
Locus ID:
gene-QYE76_009663
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 39810127 | 39814661 | + | gene-QYE76_009663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 64,628.70 Da | 46.71 | 90.94 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 72 | 118 | 2.6E-19 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 487 | 506 | 1.3 | IPR001611 |
| Pfam | PF18511 | F-box | 14 | 52 | 1.2E-6 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 48 | 3.14E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 80 | 539 | 3.14E-33 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 51 | 1.5E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 52 | 586 | 3.8E-166 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 135 | 160 | 270.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 378 | 402 | 1.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 110 | 134 | 510.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 487 | 511 | 23.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_047042750.1 | transport inhibitor response 1-like protein Os05g0150500 [Lolium rigidum] | 0 |
| Q0DKP3 | Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2 | 0 | |
| TrEMBL | I1HLS4 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Brachypodium distachyon OX=15368 GN=100822026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology