Basic Information
Locus ID:
gene-QYE76_009266
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 26747682 | 26756977 | - | gene-QYE76_009266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 151,320.88 Da | 46.83 | 93.83 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 490 | 587 | 1.07978E-12 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 972 | 1090 | 4.63519E-56 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 941 | 1039 | 5.6E-34 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 190 | 280 | 2.9E-9 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 487 | 595 | 4.0E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 756 | 1073 | 4.45E-86 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 471 | 611 | 8.1E-18 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 759 | 870 | 4.0E-19 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 887 | 980 | 1.0E-27 | IPR043128 |
| Coils | Coil | Coil | 1177 | 1197 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021750881.1 | uncharacterized protein LOC110716562 [Chenopodium quinoa] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2G9HYA0 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |