Basic Information
Locus ID:
gene-QYE76_008934
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Transposase family tnp2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 17123873 | 17128034 | + | gene-QYE76_008934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 90,862.98 Da | 53.24 | 71.39 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02992 | Transposase family tnp2 | 585 | 791 | 3.8E-92 | IPR004242 |
| Pfam | PF13963 | Transposase-associated domain | 266 | 340 | 2.7E-17 | IPR029480 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 162 | 253 | 1.88E-5 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 152 | 265 | 5.5E-7 | IPR015300 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 372 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051211796.1 | uncharacterized protein LOC127329303 [Lolium perenne] | 0 |
| TrEMBL | A0A8R7QJN3 | Transpos_assoc domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2693, CH05.4449 |
| Poaceae | Lolium multiflorum | 24 | gene-QYE76_004977, gene-QYE76_006303, gene-QYE76_006527 ... |