Basic Information
Locus ID:
gene-QYE76_008723
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 10545876 | 10550865 | - | gene-QYE76_008723 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.70 | 32,861.17 Da | 47.49 | 69.13 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00225 | Kinesin motor domain | 185 | 249 | 1.8E-12 | IPR001752 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 141 | 186 | 4.4E-8 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 111 | 143 | 1.44E-5 | IPR036855 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 185 | 284 | 5.84E-17 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 134 | 186 | 2.1E-5 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 21 | 133 | 1.7E-6 | - |
| Gene3D | G3DSA:1.20.58.1980 | - | 187 | 291 | 6.9E-17 | - |
| SMART | SM00320 | WD40_4 | 138 | 177 | 4.3E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 108 | 133 | 0.012 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 24 | 48 | 0.25 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 9.69481 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 106 | 134 | 13.03733 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 145 | 177 | 8.992876 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 186 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50067 | Kinesin motor domain profile. | 199 | 251 | 13.435572 | IPR001752 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 102 | - | - |
| Coils | Coil | Coil | 264 | 284 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_047081749.1 | zinc finger CCCH domain-containing protein 17-like [Lolium rigidum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A453P9X5 | Zinc finger CCCH domain-containing protein 48 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology