Basic Information
Locus ID:
gene-QYE76_007548
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_551 | 70480 | 84798 | - | gene-QYE76_007548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 128,988.10 Da | 38.30 | 77.36 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 589 | 627 | 0.00972011 | - |
| CDD | cd02659 | peptidase_C19C | 194 | 520 | 1.43058E-161 | - |
| CDD | cd00121 | MATH | 53 | 176 | 1.77982E-35 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 196 | 515 | 4.4E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 878 | 1083 | 1.4E-49 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 619 | 868 | 6.9E-79 | IPR024729 |
| Pfam | PF00917 | MATH domain | 58 | 178 | 8.6E-17 | IPR002083 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 589 | 633 | 3.45E-5 | IPR029071 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 546 | 3.14E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 49 | 185 | 2.78E-37 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 48 | 192 | 1.4E-48 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 794 | 891 | 4.8E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 193 | 519 | 1.3E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 676 | 793 | 4.0E-41 | - |
| SMART | SM00061 | math_3 | 53 | 157 | 2.8E-15 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 196 | 518 | 39.187721 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 51 | 176 | 34.991127 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 197 | 212 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 434 | 451 | - | IPR018200 |
| Coils | Coil | Coil | 534 | 558 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_047060449.1 | ubiquitin C-terminal hydrolase 13-like isoform X3 [Lolium rigidum] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6X8E7 | ubiquitinyl hydrolase 1 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology