Basic Information
Locus ID:
gene-QYE76_007515
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 244888080 | 244899207 | - | gene-QYE76_007515 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 108,871.07 Da | 40.93 | 71.27 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00056 | lactate/malate dehydrogenase, NAD binding domain | 303 | 352 | 3.8E-10 | IPR001236 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 834 | 948 | 1.6E-37 | IPR013103 |
| Pfam | PF08268 | F-box associated domain | 196 | 271 | 2.4E-5 | IPR013187 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 474 | 608 | 7.4E-19 | - |
| Pfam | PF00098 | Zinc knuckle | 667 | 683 | 1.0E-4 | IPR001878 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 303 | 353 | 1.28E-7 | IPR036291 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 835 | 932 | 5.34E-5 | IPR043502 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 43 | 1.7E-6 | IPR036047 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 654 | 689 | 5.86E-7 | IPR036875 |
| Gene3D | G3DSA:3.40.50.720 | - | 294 | 359 | 2.8E-13 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 53 | 1.3E-6 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 661 | 706 | 1.8E-5 | - |
| SMART | SM00343 | c2hcfinal6 | 667 | 683 | 0.0011 | IPR001878 |
| SMART | SM00256 | fbox_2 | 5 | 45 | 3.1E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 90 | 269 | 6.5E-21 | IPR017451 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 668 | 683 | 9.603271 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 653 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 659 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_051205696.1 | F-box protein At3g07870-like [Lolium perenne] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | Q8LN71 | Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0091N21.45 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1953 |
| Poaceae | Lolium multiflorum | 59 | gene-QYE76_000611, gene-QYE76_000731, gene-QYE76_000814 ... |