Basic Information
Locus ID:
gene-QYE76_006461
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 214036866 | 214047909 | - | gene-QYE76_006461 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 125,187.71 Da | 50.01 | 93.59 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 701 | 798 | 4.3138E-13 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 401 | 491 | 6.5E-9 | IPR005162 |
| Pfam | PF12937 | F-box-like | 210 | 243 | 1.5E-5 | IPR001810 |
| SUPERFAMILY | SSF50630 | Acid proteases | 697 | 806 | 5.06E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 968 | 1030 | 5.23E-12 | IPR043502 |
| SUPERFAMILY | SSF81383 | F-box domain | 211 | 252 | 6.93E-8 | IPR036047 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 959 | 1064 | 1.9E-16 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 682 | 823 | 6.2E-18 | IPR021109 |
| Gene3D | G3DSA:1.20.1280.50 | - | 210 | 245 | 9.1E-9 | - |
| SMART | SM00256 | fbox_2 | 212 | 252 | 1.7E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 206 | 253 | 9.762413 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039682991.1 | uncharacterized protein LOC120576082 [Medicago truncatula] | 0 |
| TrEMBL | A0A8B8ZNP3 | uncharacterized protein LOC120105094 OS=Phoenix dactylifera OX=42345 GN=LOC120105094 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |