Basic Information
Locus ID:
gene-QYE76_006390
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 212349179 | 212351252 | + | gene-QYE76_006390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 44,603.85 Da | 34.45 | 91.50 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 234 | 364 | 3.82544E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 247 | 355 | 1.1E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 44 | 209 | 5.5E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 87 | 377 | 2.27E-70 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 230 | 394 | 8.5E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 12 | 229 | 1.6E-61 | IPR027417 |
| SMART | SM00490 | helicmild6 | 274 | 355 | 3.6E-32 | IPR001650 |
| SMART | SM00487 | ultradead3 | 38 | 237 | 7.6E-49 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 50 | 222 | 26.950634 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 19 | 47 | 9.129774 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 233 | 394 | 25.720997 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 168 | 176 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_047049864.1 | eukaryotic initiation factor 4A-III homolog A-like [Lolium rigidum] | 0 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 0 | |
| TrEMBL | J3LQC6 | Eukaryotic initiation factor 4A-3 OS=Oryza brachyantha OX=4533 GN=102716302 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology