Basic Information
Locus ID:
gene-QYE76_006241
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 207548100 | 207554669 | + | gene-QYE76_006241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 42,571.52 Da | 40.80 | 54.89 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 98 | 114 | 1.0E-5 | IPR001878 |
| Pfam | PF03732 | Retrotransposon gag protein | 2 | 50 | 1.3E-7 | IPR005162 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 91 | 119 | 9.21E-7 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 90 | 119 | 8.7E-6 | - |
| SMART | SM00343 | c2hcfinal6 | 98 | 114 | 0.0025 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 99 | 114 | 10.064789 | IPR001878 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047045610.1 | uncharacterized protein LOC124650089 [Lolium rigidum] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah030472 |
| Poaceae | Lolium multiflorum | 226 | gene-QYE76_000514, gene-QYE76_000718, gene-QYE76_000828 ... |