Basic Information
Locus ID:
gene-QYE76_005561
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 184260396 | 184263833 | - | gene-QYE76_005561 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 71,985.40 Da | 96.75 | 63.77 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 405 | 446 | 3.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 399 | 452 | 3.33E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 372 | 451 | 2.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 405 | 445 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 405 | 446 | 12.607302 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 657 | - | - |
| Coils | Coil | Coil | 583 | 610 | - | - |
| Coils | Coil | Coil | 527 | 547 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051187997.1 | pollen-specific leucine-rich repeat extensin-like protein 2 [Lolium perenne] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LMW1 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485230.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_005517, gene-QYE76_005518, gene-QYE76_005557 ... |
| Poaceae | Oryza coarctata | 1 | Oco18G006240 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702033, Pt_Chr0702097 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG036790 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G232200.1.cds1, TraesCS5B02G230500.1.cds1 ... |