Basic Information
Locus ID:
gene-QYE76_005550
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 183970045 | 183970464 | + | gene-QYE76_005550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 12.00 | 14,977.90 Da | 65.99 | 61.87 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 1 | 49 | 2.1E-9 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 49 | 3.27E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 57 | 1.4E-14 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 1 | 54 | 2.5E-4 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 1 | 61 | 12.217678 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 113 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49780.1 | plant U-box 26. | 0 |
| RefSeq | XP_047067003.1 | U-box domain-containing protein 21-like [Lolium rigidum] | 0 |
| Q9FXA4 | U-box domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=PUB26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6TCC3 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005550 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG002010, gene_TRIDC3AG075460 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS5A02G088600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb407250_P001 |