Basic Information
Locus ID:
gene-QYE76_005518
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 182924003 | 182925313 | + | gene-QYE76_005518 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 47,126.31 Da | 94.84 | 61.58 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 324 | 365 | 8.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 371 | 1.06E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 317 | 378 | 1.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 324 | 364 | 8.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 365 | 12.474524 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 109 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051187998.1 | formin-like protein 20 [Lolium perenne] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A453KXT6 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485230.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_005517, gene-QYE76_005518, gene-QYE76_005557 ... |
| Poaceae | Oryza coarctata | 1 | Oco18G006240 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702033, Pt_Chr0702097 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG036790 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G232200.1.cds1, TraesCS5B02G230500.1.cds1 ... |