Basic Information
Locus ID:
gene-QYE76_005438
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 180795718 | 180798975 | + | gene-QYE76_005438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 79,425.64 Da | 48.61 | 61.83 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 467 | 512 | 7.7E-5 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 623 | 667 | 6.1E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 464 | 518 | 2.47E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 621 | 669 | 5.74E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 461 | 559 | 1.2E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 621 | 697 | 3.0E-13 | - |
| SMART | SM00184 | ring_2 | 467 | 516 | 0.089 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 546 | 615 | 0.017 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 616 | 683 | 0.1 | IPR002867 |
| SMART | SM00184 | ring_2 | 570 | 639 | 0.58 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 463 | 687 | 23.997272 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 467 | 512 | 9.671455 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 485 | 494 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53690.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051187676.1 | uncharacterized protein LOC127301464 [Lolium perenne] | 0 |
| Q5RFV4 | Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio OX=7955 GN=rnf144aa PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6MS15 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |