halophFGD

Basic Information

Locus ID: gene-QYE76_005269

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	175166439	175173081	+	gene-QYE76_005269

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.14	167,196.16 Da	45.71	74.51	-0.62

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	743	800	1.20116E-6	-
CDD	cd01647	RT_LTR	907	1086	6.54225E-78	-
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	1151	1221	4.0E-13	IPR041577
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	924	1084	1.6E-20	IPR000477
SUPERFAMILY	SSF53098	Ribonuclease H-like	1205	1324	4.43E-27	IPR012337
SUPERFAMILY	SSF50630	Acid proteases	741	795	4.61E-6	IPR021109
SUPERFAMILY	SSF56672	DNA/RNA polymerases	867	1223	7.45E-110	IPR043502
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	868	1011	4.0E-64	-
Gene3D	G3DSA:2.40.70.10	Acid Proteases	727	804	3.0E-7	IPR021109
Gene3D	G3DSA:3.30.70.270	-	949	1086	4.0E-64	IPR043128
Gene3D	G3DSA:3.30.420.10	-	1179	1320	8.7E-28	IPR036397
Gene3D	G3DSA:3.30.70.270	-	1098	1178	5.9E-20	IPR043128
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	905	1086	8.527134	IPR000477
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	1150	1318	16.142885	IPR001584
ProSitePatterns	PS00141	Eukaryotic and viral aspartyl proteases active site.	755	766	-	IPR001969
MobiDBLite	mobidb-lite	consensus disorder prediction	481	518	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	480	518	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	563	625	-	-

Gene Ontology

Biological Process:

GO:0006508 (proteolysis) GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004190 (aspartic-type endopeptidase activity)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_050217603.1	uncharacterized protein LOC126668453 [Mercurialis annua]
Swiss-Prot	Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
TrEMBL	A0A2T7AA45	Integrase catalytic domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J003800 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000027960
Poaceae	Lolium multiflorum	225	gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... gene-QYE76_000970, gene-QYE76_001268, gene-QYE76_001697, gene-QYE76_003222, gene-QYE76_003567, gene-QYE76_004089, gene-QYE76_004153, gene-QYE76_004233, gene-QYE76_004348, gene-QYE76_004432, gene-QYE76_004440, gene-QYE76_004789, gene-QYE76_005148, gene-QYE76_005269, gene-QYE76_005817, gene-QYE76_006870, gene-QYE76_007396, gene-QYE76_007635, gene-QYE76_008407, gene-QYE76_008759, gene-QYE76_008883, gene-QYE76_008941, gene-QYE76_010212, gene-QYE76_010567, gene-QYE76_010895, gene-QYE76_011012, gene-QYE76_011096, gene-QYE76_011097, gene-QYE76_011109, gene-QYE76_011743, gene-QYE76_013115, gene-QYE76_013278, gene-QYE76_013303, gene-QYE76_013629, gene-QYE76_013821, gene-QYE76_014108, gene-QYE76_014219, gene-QYE76_014480, gene-QYE76_014533, gene-QYE76_014620, gene-QYE76_014811, gene-QYE76_014919, gene-QYE76_015296, gene-QYE76_015559, gene-QYE76_015569, gene-QYE76_015677, gene-QYE76_016063, gene-QYE76_016567, gene-QYE76_017053, gene-QYE76_017231, gene-QYE76_017560, gene-QYE76_017723, gene-QYE76_018105, gene-QYE76_018232, gene-QYE76_018241, gene-QYE76_018720, gene-QYE76_018966, gene-QYE76_019059, gene-QYE76_019218, gene-QYE76_019290, gene-QYE76_020263, gene-QYE76_020469, gene-QYE76_020841, gene-QYE76_021352, gene-QYE76_021689, gene-QYE76_021724, gene-QYE76_021735, gene-QYE76_021898, gene-QYE76_022014, gene-QYE76_022483, gene-QYE76_022531, gene-QYE76_023270, gene-QYE76_023326, gene-QYE76_023406, gene-QYE76_023450, gene-QYE76_024385, gene-QYE76_024386, gene-QYE76_024562, gene-QYE76_024651, gene-QYE76_024687, gene-QYE76_025167, gene-QYE76_025745, gene-QYE76_025954, gene-QYE76_026175, gene-QYE76_026310, gene-QYE76_026479, gene-QYE76_026534, gene-QYE76_026563, gene-QYE76_026577, gene-QYE76_027137, gene-QYE76_027286, gene-QYE76_027909, gene-QYE76_027974, gene-QYE76_028709, gene-QYE76_028770, gene-QYE76_028799, gene-QYE76_028842, gene-QYE76_029059, gene-QYE76_029926, gene-QYE76_029971, gene-QYE76_030591, gene-QYE76_030846, gene-QYE76_030905, gene-QYE76_031136, gene-QYE76_031494, gene-QYE76_031782, gene-QYE76_032031, gene-QYE76_032125, gene-QYE76_033003, gene-QYE76_033654, gene-QYE76_033911, gene-QYE76_034294, gene-QYE76_034647, gene-QYE76_035286, gene-QYE76_036050, gene-QYE76_036235, gene-QYE76_036266, gene-QYE76_036296, gene-QYE76_036600, gene-QYE76_037097, gene-QYE76_037200, gene-QYE76_037403, gene-QYE76_037952, gene-QYE76_038117, gene-QYE76_039683, gene-QYE76_040905, gene-QYE76_041207, gene-QYE76_041280, gene-QYE76_041305, gene-QYE76_041838, gene-QYE76_041883, gene-QYE76_042099, gene-QYE76_042194, gene-QYE76_042379, gene-QYE76_042564, gene-QYE76_042586, gene-QYE76_042862, gene-QYE76_043216, gene-QYE76_043782, gene-QYE76_043902, gene-QYE76_043962, gene-QYE76_044086, gene-QYE76_044635, gene-QYE76_044672, gene-QYE76_045097, gene-QYE76_045722, gene-QYE76_046379, gene-QYE76_046416, gene-QYE76_046582, gene-QYE76_046741, gene-QYE76_046978, gene-QYE76_047299, gene-QYE76_047557, gene-QYE76_047774, gene-QYE76_047983, gene-QYE76_048542, gene-QYE76_048543, gene-QYE76_048634, gene-QYE76_048850, gene-QYE76_049109, gene-QYE76_049177, gene-QYE76_049534, gene-QYE76_050218, gene-QYE76_050488, gene-QYE76_050852, gene-QYE76_051210, gene-QYE76_051319, gene-QYE76_051438, gene-QYE76_051717, gene-QYE76_051853, gene-QYE76_051932, gene-QYE76_051946, gene-QYE76_051960, gene-QYE76_051970, gene-QYE76_052132, gene-QYE76_052133, gene-QYE76_052421, gene-QYE76_052989, gene-QYE76_053118, gene-QYE76_053600, gene-QYE76_054280, gene-QYE76_054813, gene-QYE76_055593, gene-QYE76_055687, gene-QYE76_056053, gene-QYE76_056908, gene-QYE76_057101, gene-QYE76_058359, gene-QYE76_058996, gene-QYE76_058997, gene-QYE76_059100, gene-QYE76_059364, gene-QYE76_059976, gene-QYE76_060594, gene-QYE76_061369, gene-QYE76_062302, gene-QYE76_063073, gene-QYE76_063326, gene-QYE76_063366, gene-QYE76_064053, gene-QYE76_064192, gene-QYE76_064357, gene-QYE76_064446, gene-QYE76_065008, gene-QYE76_065013, gene-QYE76_065229, gene-QYE76_065547, gene-QYE76_066521, gene-QYE76_066644, gene-QYE76_066707, gene-QYE76_066865, gene-QYE76_067239, gene-QYE76_068074, gene-QYE76_068075, gene-QYE76_069274, gene-QYE76_069520, gene-QYE76_069805, gene-QYE76_069839, gene-QYE76_069840, gene-QYE76_070942, gene-QYE76_071253, gene-QYE76_071286
Poaceae	Oryza sativa	1	ChrSy.fgenesh.mRNA.19
Poaceae	Sporobolus alterniflorus	3	Chr05G009620, Chr05G009630, Chr20G008400